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Corollary — scientific AI models, tools and databases

by corollary-labs.com · remote · no sign-in to list tools · v1.0.0 · published by com.corollary-labs

Find open biology and chemistry AI models, bioinformatics tools and databases, and run them online.

Changes · 1
CompareRegistry entry

6 tools: 1 change things and 5 only read.

Scanned Oct 21, 2026

1 check matched something in the tool definitions. No finding is not a safety guarantee. How the checks work.

claude mcp add --transport http corollary https://corollary-labs.com/mcp

Findings

Matches of fixed checks, with the text they matched.

1 warn
  • Warnhow_to_run_science_task

    The server marks "how_to_run_science_task" read-only (readOnlyHint: true), and its own name, description or input give the class "write".

    Matched text

    annotations: {"readOnlyHint":true,"openWorldHint":false}; The name "how_to_run_science_task" says "run": a word for a change.

    What this check looks for

Tools

Open a tool for its reasons and full description. Descriptions are the publisher's own words, shown as they are.

6 tools

Changes things 1Claude Code: ask
  • how_to_run_science_taskFor a piece of scientific work someone wants done — 'annotate a phage genome', 'deconvolve bulk RNA-seq into cell types', 'check assembly completeness', 'dock a ligand', 'fit an IC…1 finding

    Why it is in this group

    • The name "how_to_run_science_task" says "run": a word for a change.
    • The server marks it read-only (readOnlyHint: true), but an annotation never lowers a class.

    Findings

    • Warn

      The server marks "how_to_run_science_task" read-only (readOnlyHint: true), and its own name, description or input give the class "write".

      Matched text

      annotations: {"readOnlyHint":true,"openWorldHint":false}; The name "how_to_run_science_task" says "run": a word for a change.

      What this check looks for
    Description, as the server wrote it
    For a piece of scientific work someone wants done — 'annotate a phage genome', 'deconvolve bulk RNA-seq into cell types', 'check assembly completeness', 'dock a ligand', 'fit an IC50', 'process accelerometer data', 'call variants', 'find CRISPR arrays' — return how it is done on Corollary: the stages in order, the programs, models and databases used, what commonly goes wrong, and the page that starts it. Use this when the user wants a task done rather than a model named.

    Annotations the server declares

    • readOnlyHint: true
    • openWorldHint: false
Only reads 5Claude Code: allow
  • compare_scientific_ai_for_taskFor a task such as 'protein structure prediction', 'protein design', 'antibody design', 'molecular docking', 'single-cell', 'ADMET', 'phage genomics' or 'CRISPR', return every mode…No findings

    Why it is in this group

    • The name "compare_scientific_ai_for_task" says "compare": a word for reading.
    Description, as the server wrote it
    For a task such as 'protein structure prediction', 'protein design', 'antibody design', 'molecular docking', 'single-cell', 'ADMET', 'phage genomics' or 'CRISPR', return every model or tool Corollary lists for it — what each does, licence, whether it runs online — and guidance on how to choose between them.

    Annotations the server declares

    • readOnlyHint: true
    • openWorldHint: false
  • get_scientific_ai_detailsFull reference for one entry: what it is, how it works, key facts, uses, strengths, limitations, citation, licence, and how to run it on Corollary.No findings

    Why it is in this group

    • The name "get_scientific_ai_details" says "get": a word for reading.
    Description, as the server wrote it
    Full reference for one entry: what it is, how it works, key facts, uses, strengths, limitations, citation, licence, and how to run it on Corollary. Pass a name ('RFdiffusion'), an id ('esmfold2', 'nf-core/rnaseq', 'facebook/esm2_t33_650M_UR50D') or a corollary-labs.com URL.

    Annotations the server declares

    • readOnlyHint: true
    • openWorldHint: false
  • list_science_tasksEvery scientific analysis Corollary has a page and a method for, with its URL.No findings

    Why it is in this group

    • The name "list_science_tasks" says "list": a word for reading.
    Description, as the server wrote it
    Every scientific analysis Corollary has a page and a method for, with its URL.

    Annotations the server declares

    • readOnlyHint: true
    • openWorldHint: false
  • list_scientific_ai_tasksThe task categories Corollary compares models and tools in, with a page URL for each.No findings

    Why it is in this group

    • The name "list_scientific_ai_tasks" says "list": a word for reading.
    Description, as the server wrote it
    The task categories Corollary compares models and tools in, with a page URL for each.

    Annotations the server declares

    • readOnlyHint: true
    • openWorldHint: false
  • search_scientific_aiSearch Corollary's catalogue of open scientific AI models (protein structure prediction, protein design, docking, antibodies, genomics, single-cell, chemistry/ADMET, simulation, pa…No findings

    Why it is in this group

    • The name "search_scientific_ai" says "search": a word for reading.
    Description, as the server wrote it
    Search Corollary's catalogue of open scientific AI models (protein structure prediction, protein design, docking, antibodies, genomics, single-cell, chemistry/ADMET, simulation, pathology, weather), bioinformatics programs (BUSCO, samtools, BLAST…), scientific databases (UniProt, PDB, gnomAD…), nf-core pipelines and datasets. Each result says what it does, its licence and whether it can be run online on Corollary with no GPU or installation, with the page URL. Use it when a user asks which model or tool to use for a biology or chemistry task, or where to run one.

    Annotations the server declares

    • readOnlyHint: true
    • openWorldHint: false

This is not a safety rating, and no finding is not a safety guarantee. The groups and findings come from fixed checks of the tool definitions the server returned on the date shown, not from its code or what it does when called. How the checks work.

Install

Pinned to version 1.0.0. Values in angle brackets are yours to fill in.

claude mcp add --transport http corollary https://corollary-labs.com/mcp

Run in a terminal.

Claude Code permissions

Allow the reads, ask before a change, deny the deletes. Paste into .claude/settings.json.

.claude/settings.json
{
  "permissions": {
    "allow": [
      "mcp__corollary__search_scientific_ai",
      "mcp__corollary__get_scientific_ai_details",
      "mcp__corollary__compare_scientific_ai_for_task",
      "mcp__corollary__list_science_tasks",
      "mcp__corollary__list_scientific_ai_tasks"
    ],
    "ask": [
      "mcp__corollary__how_to_run_science_task"
    ],
    "deny": []
  }
}

Tools that only read are allowed, tools that change things ask first, tools that delete or cancel are denied. It assumes the server is installed as corollary. Review it before you use it.