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Claidex MCP

by claidex.com · remote · local (npm) · no sign-in to list tools · v1.0.0 · published by com.claidex

Biomedical failure intelligence platform for terminated trials and translational analysis.

Changes · 6
CompareRegistry entry

24 tools: 6 change things and 18 only read.

Scanned Oct 21, 2026

No check matched anything in the tool definitions. No finding is not a safety guarantee. How the checks work.

claude mcp add --transport http failure-intelligence https://app.claidex.com/api/mcp --header 'Authorization: <your-authorization>'

Tools

Open a tool for its reasons and full description. Descriptions are the publisher's own words, shown as they are.

24 tools

Changes things 6Claude Code: ask
  • claidex_research_promptCompose a rigorous, reusable investigation prompt that tells an MCP client which Claidex tools and resources to use.No findings

    Why it is in this group

    • Nothing in its name or description says what it does, so it is counted as a write.
    Description, as the server wrote it
    Compose a rigorous, reusable investigation prompt that tells an MCP client which Claidex tools and resources to use.
  • consult_specialist_modelAsk a specialist Gateway model for code, database/tool-calling, statistics, literature, preprint, or mechanistic synthesis support.No findings

    Why it is in this group

    • Nothing in its name or description says what it does, so it is counted as a write.
    Description, as the server wrote it
    Ask a specialist Gateway model for code, database/tool-calling, statistics, literature, preprint, or mechanistic synthesis support. Use for hard subproblems, second opinions, code generation/review, or complex synthesis.
  • rank_documents_by_embeddingEmbed a query and candidate documents, then rank documents by cosine similarity.No findings

    Why it is in this group

    • Nothing in its name or description says what it does, so it is counted as a write.
    Description, as the server wrote it
    Embed a query and candidate documents, then rank documents by cosine similarity. Use for semantic matching, retrieval checks, clustering triage, and lightweight RAG over user-provided passages.
  • rerank_documentsRerank candidate documents/passages against a query using a dedicated reranking model.No findings

    Why it is in this group

    • Nothing in its name or description says what it does, so it is counted as a write.
    Description, as the server wrote it
    Rerank candidate documents/passages against a query using a dedicated reranking model. Use after retrieval/search when exact relevance ordering matters.
  • run_computationEvaluate deterministic mathematical expressions with optional variables.No findings

    Why it is in this group

    • The name "run_computation" says "run": a word for a change.
    Description, as the server wrote it
    Evaluate deterministic mathematical expressions with optional variables. Use for algebra, matrices, vectors, transformations, descriptive numerical checks, and reproducible calculations. Does not execute arbitrary JavaScript or install packages.
  • run_statistical_analysisRun a statistical analysis computation.No findings

    Why it is in this group

    • The name "run_statistical_analysis" says "run": a word for a change.
    Description, as the server wrote it
    Run a statistical analysis computation. Supports: Wilson confidence intervals, binomial proportions, phase transition success rates, power calculations, Bayesian posterior estimates, descriptive statistics, and two-proportion comparisons. Returns computed values, interpretation, and LaTeX formula.
Only reads 18Claude Code: allow
  • claidex_capabilitiesReturn the Claidex MCP feature map, configured storage/model providers, safety controls, resources, prompts, and tool counts.No findings

    Why it is in this group

    • The description's first verb is "return": a word for reading.
    Description, as the server wrote it
    Return the Claidex MCP feature map, configured storage/model providers, safety controls, resources, prompts, and tool counts.
  • claidex_claim_risk_matrixSearch claims and summarize MRS bands, trial phases, failure archetypes, and high-risk programs for rapid diligence.No findings

    Why it is in this group

    • The description's first verb is "search": a word for reading.
    Description, as the server wrote it
    Search claims and summarize MRS bands, trial phases, failure archetypes, and high-risk programs for rapid diligence.
  • claidex_health_snapshotReturn Sentinel metrics, coverage, graph counts, recent automation runs, MRS bands, and preprint-watch summaries.No findings

    Why it is in this group

    • The name "claidex_health_snapshot" says "snapshot": a word for reading.
    Description, as the server wrote it
    Return Sentinel metrics, coverage, graph counts, recent automation runs, MRS bands, and preprint-watch summaries.
  • claidex_tool_catalogReturn the complete MCP tool catalog, optionally including full input schemas and filtering native versus agent-backed tools.No findings

    Why it is in this group

    • The description's first verb is "return": a word for reading.
    Description, as the server wrote it
    Return the complete MCP tool catalog, optionally including full input schemas and filtering native versus agent-backed tools.
  • fetchFetch a specific result returned by search.No findings

    Why it is in this group

    • The name "fetch" says "fetch": a word for reading.
    Description, as the server wrote it
    Fetch a specific result returned by search. This compatibility tool supports OpenAI and ChatGPT remote MCP retrieval flows.
  • fetch_research_urlFetch a public HTTPS research URL, JSON API response, package metadata endpoint, documentation page, or dataset preview.No findings

    Why it is in this group

    • The name "fetch_research_url" says "fetch": a word for reading.
    Description, as the server wrote it
    Fetch a public HTTPS research URL, JSON API response, package metadata endpoint, documentation page, or dataset preview. Blocks private/internal hosts and truncates large responses.
  • get_claim_contentRetrieve the complete text content of a specific Claidex Claim by its slug.No findings

    Why it is in this group

    • The name "get_claim_content" says "get": a word for reading.
    Description, as the server wrote it
    Retrieve the complete text content of a specific Claidex Claim by its slug. Use this when you need to read the full post-mortem analysis, including hypothesis, failure mechanism, and prevention analysis.
  • query_chemblLook up a drug or compound in ChEMBL.No findings

    Why it is in this group

    • The name "query_chembl" says "query": a word for reading.
    Description, as the server wrote it
    Look up a drug or compound in ChEMBL. Returns mechanism of action, primary target, ChEMBL ID, max development phase, molecular type, and synonyms.
  • query_clinicaltrialsSearch ClinicalTrials.gov for clinical trials.No findings

    Why it is in this group

    • The name "query_clinicaltrials" says "query": a word for reading.
    Description, as the server wrote it
    Search ClinicalTrials.gov for clinical trials. Can search by drug name, condition, target, or NCT ID. Returns trial status, phase, sponsor, primary endpoints, and why_stopped if terminated.
  • query_failure_graphQuery the Claidex failure graph for a specific gene target.No findings

    Why it is in this group

    • The name "query_failure_graph" says "query": a word for reading.
    Description, as the server wrote it
    Query the Claidex failure graph for a specific gene target. Returns the Mechanism Risk Score (MRS), failure counts by phase and archetype, and all related claim slugs.
  • query_openfdaQuery the FDA FAERS database for adverse event signals for a drug.No findings

    Why it is in this group

    • The name "query_openfda" says "query": a word for reading.
    Description, as the server wrote it
    Query the FDA FAERS database for adverse event signals for a drug. Returns top adverse event terms, serious case count, and death count.
  • query_opentargetsQuery Open Targets for target-disease association evidence.No findings

    Why it is in this group

    • The name "query_opentargets" says "query": a word for reading.
    Description, as the server wrote it
    Query Open Targets for target-disease association evidence. Returns genetic evidence score, clinical evidence, known drugs, tractability, and safety liabilities for a gene-disease pair.
  • query_package_registryLook up package metadata from npm or PyPI before recommending code, analysis packages, API clients, or dataset tooling.No findings

    Why it is in this group

    • The name "query_package_registry" says "query": a word for reading.
    Description, as the server wrote it
    Look up package metadata from npm or PyPI before recommending code, analysis packages, API clients, or dataset tooling.
  • search_claimsSearch the Claidex failure database for post-mortems matching a drug name, gene target, disease, failure archetype, or sponsor.No findings

    Why it is in this group

    • The name "search_claims" says "search": a word for reading.
    Description, as the server wrote it
    Search the Claidex failure database for post-mortems matching a drug name, gene target, disease, failure archetype, or sponsor. Returns matching claims with title, slug, drug, target, disease, phase, failure archetype, Open Targets score, and MRS score.
  • search_preprint_flagsSearch the Claidex Preprint Watch database for bioRxiv preprints flagged as contradicting the clinical failure record.No findings

    Why it is in this group

    • The name "search_preprint_flags" says "search": a word for reading.
    Description, as the server wrote it
    Search the Claidex Preprint Watch database for bioRxiv preprints flagged as contradicting the clinical failure record. Search by target gene, disease, or preprint title.
  • search_pubmedSearch PubMed for biomedical literature.No findings

    Why it is in this group

    • The name "search_pubmed" says "search": a word for reading.
    Description, as the server wrote it
    Search PubMed for biomedical literature. Returns title, authors, journal, year, DOI, abstract, and PMID for each result.

This is not a safety rating, and no finding is not a safety guarantee. The groups and findings come from fixed checks of the tool definitions the server returned on the date shown, not from its code or what it does when called. How the checks work.

Install

Pinned to version 1.0.0. Values in angle brackets are yours to fill in.

claude mcp add --transport http failure-intelligence https://app.claidex.com/api/mcp --header 'Authorization: <your-authorization>'

Run in a terminal.

Claude Code permissions

Allow the reads, ask before a change, deny the deletes. Paste into .claude/settings.json.

.claude/settings.json
{
  "permissions": {
    "allow": [
      "mcp__failure-intelligence__claidex_capabilities",
      "mcp__failure-intelligence__claidex_claim_risk_matrix",
      "mcp__failure-intelligence__claidex_health_snapshot",
      "mcp__failure-intelligence__claidex_tool_catalog",
      "mcp__failure-intelligence__fetch",
      "mcp__failure-intelligence__fetch_research_url",
      "mcp__failure-intelligence__get_claim_content",
      "mcp__failure-intelligence__query_chembl",
      "mcp__failure-intelligence__query_clinicaltrials",
      "mcp__failure-intelligence__query_failure_graph",
      "mcp__failure-intelligence__query_openfda",
      "mcp__failure-intelligence__query_opentargets",
      "mcp__failure-intelligence__query_package_registry",
      "mcp__failure-intelligence__search",
      "mcp__failure-intelligence__search_claims",
      "mcp__failure-intelligence__search_preprint_flags",
      "mcp__failure-intelligence__search_pubmed",
      "mcp__failure-intelligence__web_search"
    ],
    "ask": [
      "mcp__failure-intelligence__claidex_research_prompt",
      "mcp__failure-intelligence__consult_specialist_model",
      "mcp__failure-intelligence__rank_documents_by_embedding",
      "mcp__failure-intelligence__rerank_documents",
      "mcp__failure-intelligence__run_computation",
      "mcp__failure-intelligence__run_statistical_analysis"
    ],
    "deny": []
  }
}

Tools that only read are allowed, tools that change things ask first, tools that delete or cancel are denied. It assumes the server is installed as failure-intelligence. Review it before you use it.