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DeepDNA

by deepdna.ai · remote · no sign-in to list tools · v1.2.0 · published by ai.deepdna

Pharmacogenomics for AI agents: cited drug–gene, gene and rsID lookups plus a medication screen.

Changes · 2
CompareRegistry entry

6 tools: 2 change things and 4 only read.

Scanned Oct 21, 2026

No check matched anything in the tool definitions. No finding is not a safety guarantee. How the checks work.

claude mcp add --transport http knowledge https://deepdna.ai/mcp

Tools

Open a tool for its reasons and full description. Descriptions are the publisher's own words, shown as they are.

6 tools

Changes things 2Claude Code: ask
  • check_medicationsGiven a list of generic drug names, say which ones have a curated drug–gene record, with which genes and what each record rests on (a CPIC or DPWG guideline, a drug label, or the p…No findings

    Why it is in this group

    • Nothing in its name or description says what it does, so it is counted as a write.
    • The server marks it read-only (readOnlyHint: true), but an annotation never lowers a class.
    Description, as the server wrote it
    Given a list of generic drug names, say which ones have a curated drug–gene record, with which genes and what each record rests on (a CPIC or DPWG guideline, a drug label, or the primary literature), and which are not covered. Needs no genotype. Use it before discussing whether genetics could matter for someone's medicines.

    Annotations the server declares

    • readOnlyHint: true
    • destructiveHint: false
    • idempotentHint: true
    • openWorldHint: false
  • request_beta_accessRegister the user's interest in DeepDNA's private beta (DNA file parsing, annotation, bloodwork; not deployed yet).No findings

    Why it is in this group

    • The name "request_beta_access" says "request": a word for a change.
    Description, as the server wrote it
    Register the user's interest in DeepDNA's private beta (DNA file parsing, annotation, bloodwork; not deployed yet). Only call this after the user has explicitly agreed to share their email with DeepDNA for this purpose, and set user_consent to true. Stores the email and the optional use case; see https://deepdna.ai/privacy/.

    Annotations the server declares

    • readOnlyHint: false
    • destructiveHint: false
    • idempotentHint: true
    • openWorldHint: false
Only reads 4Claude Code: allow
  • list_genesList the genes in the DeepDNA knowledge base, with a one-line summary and category for each.No findings

    Why it is in this group

    • The name "list_genes" says "list": a word for reading.
    Description, as the server wrote it
    List the genes in the DeepDNA knowledge base, with a one-line summary and category for each.

    Annotations the server declares

    • readOnlyHint: true
    • destructiveHint: false
    • idempotentHint: true
    • openWorldHint: false
  • lookup_drug_genePharmacogenomic guidance for a gene, optionally for one drug: guideline (CPIC or DPWG, "drug label", or null when the record rests on the primary literature), summary of the recomm…No findings

    Why it is in this group

    • The name "lookup_drug_gene" says "lookup": a word for reading.
    Description, as the server wrote it
    Pharmacogenomic guidance for a gene, optionally for one drug: guideline (CPIC or DPWG, "drug label", or null when the record rests on the primary literature), summary of the recommendation, phenotypes and sources. Omit drug to list every drug curated for that gene.

    Annotations the server declares

    • readOnlyHint: true
    • destructiveHint: false
    • idempotentHint: true
    • openWorldHint: false
  • lookup_geneEverything curated about one gene: function, key variants with rsIDs, metabolizer or function phenotypes, drug interactions, what a consumer genotyping array can and cannot tell yo…No findings

    Why it is in this group

    • The name "lookup_gene" says "lookup": a word for reading.
    Description, as the server wrote it
    Everything curated about one gene: function, key variants with rsIDs, metabolizer or function phenotypes, drug interactions, what a consumer genotyping array can and cannot tell you, and sources.

    Annotations the server declares

    • readOnlyHint: true
    • destructiveHint: false
    • idempotentHint: true
    • openWorldHint: false
  • lookup_variantOne variant by dbSNP rsID: gene, star-allele or common name, alleles, functional effect, population frequency and sources.No findings

    Why it is in this group

    • The name "lookup_variant" says "lookup": a word for reading.
    Description, as the server wrote it
    One variant by dbSNP rsID: gene, star-allele or common name, alleles, functional effect, population frequency and sources. Send the rsID only, never the user's genotype. To compare a raw DNA file, do it in the agent with the record's reading block (GRCh37 plus-strand reference and variant allele): skip it when countable is false, don't trust A/T or C/G positions (strand_ambiguous) unless the file's strand is known, and treat a chip call of a rare pathogenic variant as unconfirmed. A count at one position is not a phenotype or metabolizer status.

    Annotations the server declares

    • readOnlyHint: true
    • destructiveHint: false
    • idempotentHint: true
    • openWorldHint: false

This is not a safety rating, and no finding is not a safety guarantee. The groups and findings come from fixed checks of the tool definitions the server returned on the date shown, not from its code or what it does when called. How the checks work.

Install

Pinned to version 1.2.0. Values in angle brackets are yours to fill in.

claude mcp add --transport http knowledge https://deepdna.ai/mcp

Run in a terminal.

Claude Code permissions

Allow the reads, ask before a change, deny the deletes. Paste into .claude/settings.json.

.claude/settings.json
{
  "permissions": {
    "allow": [
      "mcp__knowledge__list_genes",
      "mcp__knowledge__lookup_gene",
      "mcp__knowledge__lookup_variant",
      "mcp__knowledge__lookup_drug_gene"
    ],
    "ask": [
      "mcp__knowledge__check_medications",
      "mcp__knowledge__request_beta_access"
    ],
    "deny": []
  }
}

Tools that only read are allowed, tools that change things ask first, tools that delete or cancel are denied. It assumes the server is installed as knowledge. Review it before you use it.